BLASTN 2.2.24+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
15,734,439 sequences; 40,323,510,998 total letters
Query= blast
Length=33
RID: NYY2J6FH01N
Score E
Sequences producing significant alignments: (Bits) Value
emb|AL590682.9| Human DNA sequence from clone RP11-435F13 on chr... 58.0 2e-006
ref|XM_002446969.1| Sorghum bicolor hypothetical protein, mRNA 40.1 0.43
gb|BT119244.1| Picea glauca clone GQ04103_B18 mRNA sequence 36.2 6.7
ref|XM_002629920.1| Caenorhabditis briggsae Hypothetical protein... 36.2 6.7
gb|AC204450.4| Tupaia belangeri clone CH275-488P1, complete sequ... 36.2 6.7
ref|XM_001012908.1| Tetrahymena thermophila cyclic nucleotide-bi... 36.2 6.7
emb|BX678775.3| Mouse DNA sequence from clone RP24-82E8 on chrom... 36.2 6.7
>emb|AL590682.9| Human DNA sequence from clone RP11-435F13 on chromosome 1 Contains
a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
pseudogene, part of the RGS7 gene for regulator of G-protein
signalling 7 and a ribosomal protein large P1 (RPLP1) pseudogene,
complete sequence
Length=155156
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%), Gaps = 0/33 (0%)
Strand=Plus/Minus
Query 1 GTGGAGAATTCTCTTCACTATCCGAGGATGTTG 33
|||||||||||||||| ||||||||||||||||
Sbjct 25046 GTGGAGAATTCTCTTCGCTATCCGAGGATGTTG 25014
>ref|XM_002446969.1| Sorghum bicolor hypothetical protein, mRNA
Length=1266
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 3 GGAGAATTCTCTTCACTATC 22
||||||||||||||||||||
Sbjct 881 GGAGAATTCTCTTCACTATC 862
>gb|BT119244.1| Picea glauca clone GQ04103_B18 mRNA sequence
Length=1464
Score = 36.2 bits (18), Expect = 6.7
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 2 TGGAGAATTCTCTTCACT 19
||||||||||||||||||
Sbjct 1132 TGGAGAATTCTCTTCACT 1115
>ref|XM_002629920.1| Caenorhabditis briggsae Hypothetical protein CBG03693 (CBG03693)
mRNA, complete cds
Length=2040
Score = 36.2 bits (18), Expect = 6.7
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 8 ATTCTCTTCACTATCCGA 25
||||||||||||||||||
Sbjct 1269 ATTCTCTTCACTATCCGA 1252
>gb|AC204450.4| Tupaia belangeri clone CH275-488P1, complete sequence
Length=141755
Score = 36.2 bits (18), Expect = 6.7
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 6 GAATTCTCTTCACTATCC 23
||||||||||||||||||
Sbjct 70019 GAATTCTCTTCACTATCC 70036
>ref|XM_001012908.1| Tetrahymena thermophila cyclic nucleotide-binding domain containing
protein, mRNA
Length=2484
Score = 36.2 bits (18), Expect = 6.7
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 3 GGAGAATTCTCTTCACTA 20
||||||||||||||||||
Sbjct 2051 GGAGAATTCTCTTCACTA 2034
>emb|BX678775.3| Mouse DNA sequence from clone RP24-82E8 on chromosome 11, complete
sequence
Length=65735
Score = 36.2 bits (18), Expect = 6.7
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 2 TGGAGAATTCTCTTCACT 19
||||||||||||||||||
Sbjct 7102 TGGAGAATTCTCTTCACT 7119
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 520114688834
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 7, 2012 04:42 PM
Number of letters in database: 40,323,510,998
Number of sequences in database: 15,734,439
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2